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Cluster: HRGMv2_0905_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0905_18 HRGMv2_0905_18_12 9426 10220 - 3.A.1.34.1
TC HRGMv2_0905_18 HRGMv2_0905_18_13 10213 11136 - 3.A.1.34.1
TC HRGMv2_0905_18 HRGMv2_0905_18_14 11340 12320 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_0905_18 HRGMv2_0905_18_15 12481 13266 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0905_18 HRGMv2_0905_18_16 13526 14929 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_0905_18 HRGMv2_0905_18_17 15111 15674 - 4.A.1.2.6
peptidase HRGMv2_0905_18 HRGMv2_0905_18_18 15918 16820 + S09.UPW
pfam HRGMv2_0905_18 HRGMv2_0905_18_19 17244 18365 - DEDD_Tnp_IS110 | Transposase_20
TC HRGMv2_0905_18 HRGMv2_0905_18_20 18687 21047 + 9.A.8.1.6
TC HRGMv2_0905_18 HRGMv2_0905_18_21 21171 22367 + 2.A.1.2.18
CAZyme HRGMv2_0905_18 HRGMv2_0905_18_22 22521 23897 + GH13_20
Gene ID: HRGMv2_0905_18_12
Type: TC
Location: 9426 - 10220 (-)
Gene ID: HRGMv2_0905_18_13
Type: TC
Location: 10213 - 11136 (-)
Gene ID: HRGMv2_0905_18_14
Type: TC
Location: 11340 - 12320 (-)
Gene ID: HRGMv2_0905_18_15
Type:
Location: 12481 - 13266 (-)
Gene ID: HRGMv2_0905_18_16
Type: pfam
Location: 13526 - 14929 (-)
Gene ID: HRGMv2_0905_18_17
Type: TC
Location: 15111 - 15674 (-)
Gene ID: HRGMv2_0905_18_18
Type: peptidase
Location: 15918 - 16820 (+)
Gene ID: HRGMv2_0905_18_19
Type: pfam
Location: 17244 - 18365 (-)
Gene ID: HRGMv2_0905_18_20
Type: TC
Location: 18687 - 21047 (+)
Gene ID: HRGMv2_0905_18_21
Type: TC
Location: 21171 - 22367 (+)
Gene ID: HRGMv2_0905_18_22
Type: CAZyme
Location: 22521 - 23897 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0905_18_19 vegan > omnivore 1.83494 0.00566

🧭 Explore Read Mapping of CGC

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