Cluster: HRGMv2_0905_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0905
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0905_5 | HRGMv2_0905_5_50 | 49719 | 51140 | - | GH1 |
| TC | HRGMv2_0905_5 | HRGMv2_0905_5_51 | 51216 | 52994 | - | 4.A.3.1.1 |
| TF | HRGMv2_0905_5 | HRGMv2_0905_5_52 | 53270 | 54280 | + | LacI |
| CAZyme | HRGMv2_0905_5 | HRGMv2_0905_5_53 | 54625 | 56064 | - | GH1 |
| TC | HRGMv2_0905_5 | HRGMv2_0905_5_54 | 56131 | 57906 | - | 4.A.3.1.1 |
| TF | HRGMv2_0905_5 | HRGMv2_0905_5_55 | 58264 | 59268 | + | LacI |
| TC | HRGMv2_0905_5 | HRGMv2_0905_5_56 | 59483 | 59821 | + | 4.A.3.1.2 |
Gene ID: HRGMv2_0905_5_50
Type: CAZyme
Location: 49719 - 51140 (-)
Type: CAZyme
Location: 49719 - 51140 (-)
Gene ID: HRGMv2_0905_5_51
Type: TC
Location: 51216 - 52994 (-)
Type: TC
Location: 51216 - 52994 (-)
Gene ID: HRGMv2_0905_5_52
Type: TF
Location: 53270 - 54280 (+)
Type: TF
Location: 53270 - 54280 (+)
Gene ID: HRGMv2_0905_5_53
Type: CAZyme
Location: 54625 - 56064 (-)
Type: CAZyme
Location: 54625 - 56064 (-)
Gene ID: HRGMv2_0905_5_54
Type: TC
Location: 56131 - 57906 (-)
Type: TC
Location: 56131 - 57906 (-)
Gene ID: HRGMv2_0905_5_55
Type: TF
Location: 58264 - 59268 (+)
Type: TF
Location: 58264 - 59268 (+)
Gene ID: HRGMv2_0905_5_56
Type: TC
Location: 59483 - 59821 (+)
Type: TC
Location: 59483 - 59821 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.