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Cluster: HRGMv2_0905_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0905_5 HRGMv2_0905_5_34 34485 34928 + 4.A.6.1.16
pfam HRGMv2_0905_5 HRGMv2_0905_5_35 34928 35209 + YajC
TC HRGMv2_0905_5 HRGMv2_0905_5_36 35246 35728 + 4.A.6.1.4
TC HRGMv2_0905_5 HRGMv2_0905_5_37 35819 36619 + 4.A.6.1.4
TC HRGMv2_0905_5 HRGMv2_0905_5_38 36609 37691 + 4.A.6.1.4
TF HRGMv2_0905_5 HRGMv2_0905_5_39 37877 38608 + GntR
STP HRGMv2_0905_5 HRGMv2_0905_5_40 38723 39889 + SIS | SIS
CAZyme HRGMv2_0905_5 HRGMv2_0905_5_41 40007 41176 + CE9
Gene ID: HRGMv2_0905_5_34
Type: TC
Location: 34485 - 34928 (+)
Gene ID: HRGMv2_0905_5_35
Type: pfam
Location: 34928 - 35209 (+)
Gene ID: HRGMv2_0905_5_36
Type: TC
Location: 35246 - 35728 (+)
Gene ID: HRGMv2_0905_5_37
Type: TC
Location: 35819 - 36619 (+)
Gene ID: HRGMv2_0905_5_38
Type: TC
Location: 36609 - 37691 (+)
Gene ID: HRGMv2_0905_5_39
Type: TF
Location: 37877 - 38608 (+)
Gene ID: HRGMv2_0905_5_40
Type: STP
Location: 38723 - 39889 (+)
Gene ID: HRGMv2_0905_5_41
Type: CAZyme
Location: 40007 - 41176 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0905_5_35 vegan > omnivore 1.12201 0.00566

🧭 Explore Read Mapping of CGC

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