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Cluster: HRGMv2_0902_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0902_2 HRGMv2_0902_2_27 24310 25104 - 3.A.1.34.1
TC HRGMv2_0902_2 HRGMv2_0902_2_28 25097 26020 - 3.A.1.34.1
TC HRGMv2_0902_2 HRGMv2_0902_2_29 26225 27205 - 3.A.1.34.1
pfam HRGMv2_0902_2 HRGMv2_0902_2_30 27365 28153 - WYL
pfam HRGMv2_0902_2 HRGMv2_0902_2_31 28411 29814 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_0902_2 HRGMv2_0902_2_32 29951 31885 - 9.B.97.5.1
TC HRGMv2_0902_2 HRGMv2_0902_2_33 32121 32762 - 4.A.1.2.6
peptidase HRGMv2_0902_2 HRGMv2_0902_2_34 32931 33830 + S09.UPW
NULL(UNKNOWN) HRGMv2_0902_2 HRGMv2_0902_2_35 33878 34198 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0902_2 HRGMv2_0902_2_36 34320 36680 + 9.A.8.1.6
TC HRGMv2_0902_2 HRGMv2_0902_2_37 36804 37988 + 2.A.1.2.18
CAZyme HRGMv2_0902_2 HRGMv2_0902_2_38 38309 39685 + GH13_20
Gene ID: HRGMv2_0902_2_27
Type: TC
Location: 24310 - 25104 (-)
Gene ID: HRGMv2_0902_2_28
Type: TC
Location: 25097 - 26020 (-)
Gene ID: HRGMv2_0902_2_29
Type: TC
Location: 26225 - 27205 (-)
Gene ID: HRGMv2_0902_2_30
Type: pfam
Location: 27365 - 28153 (-)
Gene ID: HRGMv2_0902_2_31
Type: pfam
Location: 28411 - 29814 (-)
Gene ID: HRGMv2_0902_2_32
Type: TC
Location: 29951 - 31885 (-)
Gene ID: HRGMv2_0902_2_33
Type: TC
Location: 32121 - 32762 (-)
Gene ID: HRGMv2_0902_2_34
Type: peptidase
Location: 32931 - 33830 (+)
Gene ID: HRGMv2_0902_2_35
Type:
Location: 33878 - 34198 (+)
Gene ID: HRGMv2_0902_2_36
Type: TC
Location: 34320 - 36680 (+)
Gene ID: HRGMv2_0902_2_37
Type: TC
Location: 36804 - 37988 (+)
Gene ID: HRGMv2_0902_2_38
Type: CAZyme
Location: 38309 - 39685 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0902_2_32 vegan > omnivore 1.44960 0.01287

🧭 Explore Read Mapping of CGC

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