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Cluster: HRGMv2_0902_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0902_1 HRGMv2_0902_1_141 153535 155082 - 2.A.66.1.40
CAZyme HRGMv2_0902_1 HRGMv2_0902_1_142 155094 156101 - GT2
pfam HRGMv2_0902_1 HRGMv2_0902_1_143 156131 157033 - Caps_synth
NULL(UNKNOWN) HRGMv2_0902_1 HRGMv2_0902_1_144 157030 157281 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0902_1 HRGMv2_0902_1_145 158295 159365 - GT2
pfam HRGMv2_0902_1 HRGMv2_0902_1_146 159380 160525 - Radical_SAM | SPASM
CAZyme HRGMv2_0902_1 HRGMv2_0902_1_147 160531 161793 - GT4
CAZyme HRGMv2_0902_1 HRGMv2_0902_1_148 161790 162902 - GT4
Gene ID: HRGMv2_0902_1_141
Type: TC
Location: 153535 - 155082 (-)
Gene ID: HRGMv2_0902_1_142
Type: CAZyme
Location: 155094 - 156101 (-)
Gene ID: HRGMv2_0902_1_143
Type: pfam
Location: 156131 - 157033 (-)
Gene ID: HRGMv2_0902_1_144
Type:
Location: 157030 - 157281 (-)
Gene ID: HRGMv2_0902_1_145
Type: CAZyme
Location: 158295 - 159365 (-)
Gene ID: HRGMv2_0902_1_146
Type: pfam
Location: 159380 - 160525 (-)
Gene ID: HRGMv2_0902_1_147
Type: CAZyme
Location: 160531 - 161793 (-)
Gene ID: HRGMv2_0902_1_148
Type: CAZyme
Location: 161790 - 162902 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0902_1_146 vegetarian > vegan 1.40180 0.01701

🧭 Explore Read Mapping of CGC

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