Cluster: HRGMv2_0899_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0899_8 | HRGMv2_0899_8_55 | 63361 | 65610 | + | 1.I.1.1.3 |
| STP | HRGMv2_0899_8 | HRGMv2_0899_8_56 | 66232 | 66993 | + | Fer4 |
| TC | HRGMv2_0899_8 | HRGMv2_0899_8_57 | 67337 | 67849 | + | 4.A.1.2.5 |
| pfam | HRGMv2_0899_8 | HRGMv2_0899_8_58 | 67856 | 68722 | + | PRD | PRD | CAT_RBD |
| TC | HRGMv2_0899_8 | HRGMv2_0899_8_59 | 68822 | 70438 | + | 4.A.1.1.3 |
| CAZyme | HRGMv2_0899_8 | HRGMv2_0899_8_60 | 70442 | 71824 | + | GH4 |
Gene ID: HRGMv2_0899_8_55
Type: TC
Location: 63361 - 65610 (+)
Type: TC
Location: 63361 - 65610 (+)
Gene ID: HRGMv2_0899_8_56
Type: STP
Location: 66232 - 66993 (+)
Type: STP
Location: 66232 - 66993 (+)
Gene ID: HRGMv2_0899_8_57
Type: TC
Location: 67337 - 67849 (+)
Type: TC
Location: 67337 - 67849 (+)
Gene ID: HRGMv2_0899_8_58
Type: pfam
Location: 67856 - 68722 (+)
Type: pfam
Location: 67856 - 68722 (+)
Gene ID: HRGMv2_0899_8_59
Type: TC
Location: 68822 - 70438 (+)
Type: TC
Location: 68822 - 70438 (+)
Gene ID: HRGMv2_0899_8_60
Type: CAZyme
Location: 70442 - 71824 (+)
Type: CAZyme
Location: 70442 - 71824 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.