Cluster: HRGMv2_0899_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0899_4 | HRGMv2_0899_4_35 | 42495 | 43733 | - | GH105 |
| pfam | HRGMv2_0899_4 | HRGMv2_0899_4_36 | 43841 | 44509 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0899_4 | HRGMv2_0899_4_37 | 44579 | 46744 | - | CE19 | CE8 |
| CAZyme | HRGMv2_0899_4 | HRGMv2_0899_4_38 | 46879 | 48474 | - | GH28 |
| TC | HRGMv2_0899_4 | HRGMv2_0899_4_39 | 48590 | 50149 | - | 2.A.2.5.1 |
Gene ID: HRGMv2_0899_4_35
Type: CAZyme
Location: 42495 - 43733 (-)
Type: CAZyme
Location: 42495 - 43733 (-)
Gene ID: HRGMv2_0899_4_36
Type: pfam
Location: 43841 - 44509 (-)
Type: pfam
Location: 43841 - 44509 (-)
Gene ID: HRGMv2_0899_4_37
Type: CAZyme
Location: 44579 - 46744 (-)
Type: CAZyme
Location: 44579 - 46744 (-)
Gene ID: HRGMv2_0899_4_38
Type: CAZyme
Location: 46879 - 48474 (-)
Type: CAZyme
Location: 46879 - 48474 (-)
Gene ID: HRGMv2_0899_4_39
Type: TC
Location: 48590 - 50149 (-)
Type: TC
Location: 48590 - 50149 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.