Cluster: HRGMv2_0899_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0899_1 | HRGMv2_0899_1_111 | 126136 | 127155 | + | 9.B.146.1.6 |
| pfam | HRGMv2_0899_1 | HRGMv2_0899_1_112 | 127165 | 128571 | + | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_0899_1 | HRGMv2_0899_1_113 | 128608 | 130101 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_0899_1 | HRGMv2_0899_1_114 | 130091 | 131206 | + | GT28 |
Gene ID: HRGMv2_0899_1_111
Type: TC
Location: 126136 - 127155 (+)
Type: TC
Location: 126136 - 127155 (+)
Gene ID: HRGMv2_0899_1_112
Type: pfam
Location: 127165 - 128571 (+)
Type: pfam
Location: 127165 - 128571 (+)
Gene ID: HRGMv2_0899_1_113
Type: TC
Location: 128608 - 130101 (+)
Type: TC
Location: 128608 - 130101 (+)
Gene ID: HRGMv2_0899_1_114
Type: CAZyme
Location: 130091 - 131206 (+)
Type: CAZyme
Location: 130091 - 131206 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.