Cluster: HRGMv2_0899_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0899_1 | HRGMv2_0899_1_24 | 25954 | 26973 | + | GH109 |
| pfam | HRGMv2_0899_1 | HRGMv2_0899_1_25 | 27103 | 27969 | + | AP_endonuc_2 |
| TC | HRGMv2_0899_1 | HRGMv2_0899_1_26 | 28117 | 28977 | + | 3.A.1.3.15 |
| TC | HRGMv2_0899_1 | HRGMv2_0899_1_27 | 29096 | 30457 | + | 3.A.1.3.16 |
| TC | HRGMv2_0899_1 | HRGMv2_0899_1_28 | 30470 | 31222 | + | 3.A.1.3.20 |
Gene ID: HRGMv2_0899_1_24
Type: CAZyme
Location: 25954 - 26973 (+)
Type: CAZyme
Location: 25954 - 26973 (+)
Gene ID: HRGMv2_0899_1_25
Type: pfam
Location: 27103 - 27969 (+)
Type: pfam
Location: 27103 - 27969 (+)
Gene ID: HRGMv2_0899_1_26
Type: TC
Location: 28117 - 28977 (+)
Type: TC
Location: 28117 - 28977 (+)
Gene ID: HRGMv2_0899_1_27
Type: TC
Location: 29096 - 30457 (+)
Type: TC
Location: 29096 - 30457 (+)
Gene ID: HRGMv2_0899_1_28
Type: TC
Location: 30470 - 31222 (+)
Type: TC
Location: 30470 - 31222 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.