Cluster: HRGMv2_0899_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0899_37 | HRGMv2_0899_37_5 | 4850 | 5566 | - | 9.B.143.2.3 |
| pfam | HRGMv2_0899_37 | HRGMv2_0899_37_6 | 5819 | 7960 | + | Radical_SAM_N | DUF3362 |
| TC | HRGMv2_0899_37 | HRGMv2_0899_37_7 | 8086 | 9456 | - | 4.A.1.2.11 |
| CAZyme | HRGMv2_0899_37 | HRGMv2_0899_37_8 | 9468 | 10946 | - | GH1 |
Gene ID: HRGMv2_0899_37_5
Type: TC
Location: 4850 - 5566 (-)
Type: TC
Location: 4850 - 5566 (-)
Gene ID: HRGMv2_0899_37_6
Type: pfam
Location: 5819 - 7960 (+)
Type: pfam
Location: 5819 - 7960 (+)
Gene ID: HRGMv2_0899_37_7
Type: TC
Location: 8086 - 9456 (-)
Type: TC
Location: 8086 - 9456 (-)
Gene ID: HRGMv2_0899_37_8
Type: CAZyme
Location: 9468 - 10946 (-)
Type: CAZyme
Location: 9468 - 10946 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0899_37_7 | vegan > omnivore | 1.12585 | 0.01882 |
| HRGMv2_0899_37_8 | vegan > omnivore | 1.13944 | 0.01882 |