Cluster: HRGMv2_0899_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0899_34 | HRGMv2_0899_34_10 | 8946 | 10451 | + | GH77 |
| CAZyme | HRGMv2_0899_34 | HRGMv2_0899_34_11 | 10580 | 12847 | + | GT35 |
| TC | HRGMv2_0899_34 | HRGMv2_0899_34_12 | 13304 | 14503 | - | 3.A.1.1.22 |
| TC | HRGMv2_0899_34 | HRGMv2_0899_34_13 | 14572 | 15411 | - | 3.A.1.1.45 |
Gene ID: HRGMv2_0899_34_10
Type: CAZyme
Location: 8946 - 10451 (+)
Type: CAZyme
Location: 8946 - 10451 (+)
Gene ID: HRGMv2_0899_34_11
Type: CAZyme
Location: 10580 - 12847 (+)
Type: CAZyme
Location: 10580 - 12847 (+)
Gene ID: HRGMv2_0899_34_12
Type: TC
Location: 13304 - 14503 (-)
Type: TC
Location: 13304 - 14503 (-)
Gene ID: HRGMv2_0899_34_13
Type: TC
Location: 14572 - 15411 (-)
Type: TC
Location: 14572 - 15411 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.