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Cluster: HRGMv2_0899_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0899_28 HRGMv2_0899_28_6 4083 5459 - GH13_20
TC HRGMv2_0899_28 HRGMv2_0899_28_7 5614 6810 - 2.A.1.2.18
NULL(UNKNOWN) HRGMv2_0899_28 HRGMv2_0899_28_8 6986 7738 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0899_28 HRGMv2_0899_28_9 7904 9277 - GH4
TF HRGMv2_0899_28 HRGMv2_0899_28_10 9452 10204 + HTH_6
TC HRGMv2_0899_28 HRGMv2_0899_28_11 10267 11451 - 4.A.1.1.3
TC HRGMv2_0899_28 HRGMv2_0899_28_12 12247 14607 - 9.A.8.1.6
peptidase HRGMv2_0899_28 HRGMv2_0899_28_13 15041 15943 - S09.UPW
TC HRGMv2_0899_28 HRGMv2_0899_28_14 16187 16750 + 4.A.1.2.6
pfam HRGMv2_0899_28 HRGMv2_0899_28_15 16932 18335 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_0899_28 HRGMv2_0899_28_16 18594 19379 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0899_28 HRGMv2_0899_28_17 19540 20520 + 3.A.1.34.1
TC HRGMv2_0899_28 HRGMv2_0899_28_18 20725 21648 + 3.A.1.34.1
TC HRGMv2_0899_28 HRGMv2_0899_28_19 21641 22435 + 3.A.1.34.1
Gene ID: HRGMv2_0899_28_6
Type: CAZyme
Location: 4083 - 5459 (-)
Gene ID: HRGMv2_0899_28_7
Type: TC
Location: 5614 - 6810 (-)
Gene ID: HRGMv2_0899_28_8
Type:
Location: 6986 - 7738 (-)
Gene ID: HRGMv2_0899_28_9
Type: CAZyme
Location: 7904 - 9277 (-)
Gene ID: HRGMv2_0899_28_10
Type: TF
Location: 9452 - 10204 (+)
Gene ID: HRGMv2_0899_28_11
Type: TC
Location: 10267 - 11451 (-)
Gene ID: HRGMv2_0899_28_12
Type: TC
Location: 12247 - 14607 (-)
Gene ID: HRGMv2_0899_28_13
Type: peptidase
Location: 15041 - 15943 (-)
Gene ID: HRGMv2_0899_28_14
Type: TC
Location: 16187 - 16750 (+)
Gene ID: HRGMv2_0899_28_15
Type: pfam
Location: 16932 - 18335 (+)
Gene ID: HRGMv2_0899_28_16
Type:
Location: 18594 - 19379 (+)
Gene ID: HRGMv2_0899_28_17
Type: TC
Location: 19540 - 20520 (+)
Gene ID: HRGMv2_0899_28_18
Type: TC
Location: 20725 - 21648 (+)
Gene ID: HRGMv2_0899_28_19
Type: TC
Location: 21641 - 22435 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0899_28_8 vegan > omnivore 1.60326 0.01882
HRGMv2_0899_28_9 vegan > omnivore 1.32744 0.01882

🧭 Explore Read Mapping of CGC

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