Cluster: HRGMv2_0899_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0899_23 | HRGMv2_0899_23_18 | 18131 | 20347 | + | 9.B.97.5.1 |
| pfam | HRGMv2_0899_23 | HRGMv2_0899_23_19 | 20992 | 22311 | + | Transposase_mut |
| TC | HRGMv2_0899_23 | HRGMv2_0899_23_20 | 22406 | 23668 | - | 2.A.55.3.6 |
| STP | HRGMv2_0899_23 | HRGMv2_0899_23_21 | 23677 | 25521 | - | CBS | CBS |
| CAZyme | HRGMv2_0899_23 | HRGMv2_0899_23_22 | 25843 | 27249 | - | CE4 |
Gene ID: HRGMv2_0899_23_18
Type: TC
Location: 18131 - 20347 (+)
Type: TC
Location: 18131 - 20347 (+)
Gene ID: HRGMv2_0899_23_19
Type: pfam
Location: 20992 - 22311 (+)
Type: pfam
Location: 20992 - 22311 (+)
Gene ID: HRGMv2_0899_23_20
Type: TC
Location: 22406 - 23668 (-)
Type: TC
Location: 22406 - 23668 (-)
Gene ID: HRGMv2_0899_23_21
Type: STP
Location: 23677 - 25521 (-)
Type: STP
Location: 23677 - 25521 (-)
Gene ID: HRGMv2_0899_23_22
Type: CAZyme
Location: 25843 - 27249 (-)
Type: CAZyme
Location: 25843 - 27249 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.