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Cluster: HRGMv2_0899_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0899_16 HRGMv2_0899_16_12 10248 11033 - 3.A.1.3.20
TC HRGMv2_0899_16 HRGMv2_0899_16_13 11056 12204 - 3.A.1.3.20
TC HRGMv2_0899_16 HRGMv2_0899_16_14 12361 13140 - 3.A.1.3.20
pfam HRGMv2_0899_16 HRGMv2_0899_16_15 13404 14297 - Aldose_epim
NULL(UNKNOWN) HRGMv2_0899_16 HRGMv2_0899_16_16 14411 15280 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0899_16 HRGMv2_0899_16_17 15542 16795 + 2.A.1.2.25
TC HRGMv2_0899_16 HRGMv2_0899_16_18 17026 18588 - 4.A.1.1.3
CAZyme HRGMv2_0899_16 HRGMv2_0899_16_19 18671 19996 - GH4
Gene ID: HRGMv2_0899_16_12
Type: TC
Location: 10248 - 11033 (-)
Gene ID: HRGMv2_0899_16_13
Type: TC
Location: 11056 - 12204 (-)
Gene ID: HRGMv2_0899_16_14
Type: TC
Location: 12361 - 13140 (-)
Gene ID: HRGMv2_0899_16_15
Type: pfam
Location: 13404 - 14297 (-)
Gene ID: HRGMv2_0899_16_16
Type:
Location: 14411 - 15280 (-)
Gene ID: HRGMv2_0899_16_17
Type: TC
Location: 15542 - 16795 (+)
Gene ID: HRGMv2_0899_16_18
Type: TC
Location: 17026 - 18588 (-)
Gene ID: HRGMv2_0899_16_19
Type: CAZyme
Location: 18671 - 19996 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0899_16_12 vegetarian > vegan 1.11423 0.00050

🧭 Explore Read Mapping of CGC

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