Cluster: HRGMv2_0899_CGC10
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0899_10 | HRGMv2_0899_10_2 | 174 | 1145 | - | GT81 |
| TC | HRGMv2_0899_10 | HRGMv2_0899_10_3 | 1306 | 2151 | + | 3.A.1.103.6 |
| TC | HRGMv2_0899_10 | HRGMv2_0899_10_4 | 2163 | 2930 | + | 3.A.1.103.1 |
Gene ID: HRGMv2_0899_10_2
Type: CAZyme
Location: 174 - 1145 (-)
Type: CAZyme
Location: 174 - 1145 (-)
Gene ID: HRGMv2_0899_10_3
Type: TC
Location: 1306 - 2151 (+)
Type: TC
Location: 1306 - 2151 (+)
Gene ID: HRGMv2_0899_10_4
Type: TC
Location: 2163 - 2930 (+)
Type: TC
Location: 2163 - 2930 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.