Cluster: HRGMv2_0899_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0899_1 | HRGMv2_0899_1_1 | 1 | 654 | + | 3.A.1.5.20 |
| STP | HRGMv2_0899_1 | HRGMv2_0899_1_2 | 1397 | 3742 | + | GAF | SpoIIE |
| STP | HRGMv2_0899_1 | HRGMv2_0899_1_3 | 3821 | 4567 | + | STAS |
| CAZyme | HRGMv2_0899_1 | HRGMv2_0899_1_4 | 5152 | 6885 | + | GH13_30 |
Gene ID: HRGMv2_0899_1_1
Type: TC
Location: 1 - 654 (+)
Type: TC
Location: 1 - 654 (+)
Gene ID: HRGMv2_0899_1_2
Type: STP
Location: 1397 - 3742 (+)
Type: STP
Location: 1397 - 3742 (+)
Gene ID: HRGMv2_0899_1_3
Type: STP
Location: 3821 - 4567 (+)
Type: STP
Location: 3821 - 4567 (+)
Gene ID: HRGMv2_0899_1_4
Type: CAZyme
Location: 5152 - 6885 (+)
Type: CAZyme
Location: 5152 - 6885 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_F
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.