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Cluster: HRGMv2_0898_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0898_15 HRGMv2_0898_15_3 1699 2142 + 4.A.6.1.16
pfam HRGMv2_0898_15 HRGMv2_0898_15_4 2142 2423 + YajC
TC HRGMv2_0898_15 HRGMv2_0898_15_5 2460 2942 + 4.A.6.1.4
TC HRGMv2_0898_15 HRGMv2_0898_15_6 3033 3833 + 4.A.6.1.4
TC HRGMv2_0898_15 HRGMv2_0898_15_7 3823 4905 + 4.A.6.1.4
TF HRGMv2_0898_15 HRGMv2_0898_15_8 5091 5822 + GntR
STP HRGMv2_0898_15 HRGMv2_0898_15_9 5937 7103 + SIS | SIS
CAZyme HRGMv2_0898_15 HRGMv2_0898_15_10 7222 8391 + CE9
Gene ID: HRGMv2_0898_15_3
Type: TC
Location: 1699 - 2142 (+)
Gene ID: HRGMv2_0898_15_4
Type: pfam
Location: 2142 - 2423 (+)
Gene ID: HRGMv2_0898_15_5
Type: TC
Location: 2460 - 2942 (+)
Gene ID: HRGMv2_0898_15_6
Type: TC
Location: 3033 - 3833 (+)
Gene ID: HRGMv2_0898_15_7
Type: TC
Location: 3823 - 4905 (+)
Gene ID: HRGMv2_0898_15_8
Type: TF
Location: 5091 - 5822 (+)
Gene ID: HRGMv2_0898_15_9
Type: STP
Location: 5937 - 7103 (+)
Gene ID: HRGMv2_0898_15_10
Type: CAZyme
Location: 7222 - 8391 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0898_15_4 vegan > omnivore 1.06495 0.00566

🧭 Explore Read Mapping of CGC

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