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Cluster: HRGMv2_0897_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0897_3 HRGMv2_0897_3_9 9599 10393 - 3.A.1.34.1
TC HRGMv2_0897_3 HRGMv2_0897_3_10 10386 11309 - 3.A.1.34.1
TC HRGMv2_0897_3 HRGMv2_0897_3_11 11499 12479 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_0897_3 HRGMv2_0897_3_12 12640 13425 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0897_3 HRGMv2_0897_3_13 13675 15078 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_0897_3 HRGMv2_0897_3_14 15260 15823 - 4.A.1.2.6
peptidase HRGMv2_0897_3 HRGMv2_0897_3_15 16068 16967 + S09.UPW
NULL(UNKNOWN) HRGMv2_0897_3 HRGMv2_0897_3_16 17015 17335 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0897_3 HRGMv2_0897_3_17 17457 19817 + 9.A.8.1.6
TC HRGMv2_0897_3 HRGMv2_0897_3_18 19939 21135 + 2.A.1.2.18
CAZyme HRGMv2_0897_3 HRGMv2_0897_3_19 21290 22666 + GH13_20
Gene ID: HRGMv2_0897_3_9
Type: TC
Location: 9599 - 10393 (-)
Gene ID: HRGMv2_0897_3_10
Type: TC
Location: 10386 - 11309 (-)
Gene ID: HRGMv2_0897_3_11
Type: TC
Location: 11499 - 12479 (-)
Gene ID: HRGMv2_0897_3_12
Type:
Location: 12640 - 13425 (-)
Gene ID: HRGMv2_0897_3_13
Type: pfam
Location: 13675 - 15078 (-)
Gene ID: HRGMv2_0897_3_14
Type: TC
Location: 15260 - 15823 (-)
Gene ID: HRGMv2_0897_3_15
Type: peptidase
Location: 16068 - 16967 (+)
Gene ID: HRGMv2_0897_3_16
Type:
Location: 17015 - 17335 (+)
Gene ID: HRGMv2_0897_3_17
Type: TC
Location: 17457 - 19817 (+)
Gene ID: HRGMv2_0897_3_18
Type: TC
Location: 19939 - 21135 (+)
Gene ID: HRGMv2_0897_3_19
Type: CAZyme
Location: 21290 - 22666 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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