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Cluster: HRGMv2_0896_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0896_32 HRGMv2_0896_32_3 1977 3398 - GH1
TC HRGMv2_0896_32 HRGMv2_0896_32_4 3474 4631 - 4.A.3.1.1
TF HRGMv2_0896_32 HRGMv2_0896_32_5 5527 6537 + LacI
TC HRGMv2_0896_32 HRGMv2_0896_32_6 6875 8635 - 4.A.3.1.1
CAZyme HRGMv2_0896_32 HRGMv2_0896_32_7 8812 10254 - GH1
TF HRGMv2_0896_32 HRGMv2_0896_32_8 10596 11633 + LacI
CAZyme HRGMv2_0896_32 HRGMv2_0896_32_9 11913 13352 - GH1
TC HRGMv2_0896_32 HRGMv2_0896_32_10 13419 15185 - 4.A.3.1.1
TF HRGMv2_0896_32 HRGMv2_0896_32_11 15543 16547 + LacI
TC HRGMv2_0896_32 HRGMv2_0896_32_12 16762 17100 + 4.A.3.1.2
Gene ID: HRGMv2_0896_32_3
Type: CAZyme
Location: 1977 - 3398 (-)
Gene ID: HRGMv2_0896_32_4
Type: TC
Location: 3474 - 4631 (-)
Gene ID: HRGMv2_0896_32_5
Type: TF
Location: 5527 - 6537 (+)
Gene ID: HRGMv2_0896_32_6
Type: TC
Location: 6875 - 8635 (-)
Gene ID: HRGMv2_0896_32_7
Type: CAZyme
Location: 8812 - 10254 (-)
Gene ID: HRGMv2_0896_32_8
Type: TF
Location: 10596 - 11633 (+)
Gene ID: HRGMv2_0896_32_9
Type: CAZyme
Location: 11913 - 13352 (-)
Gene ID: HRGMv2_0896_32_10
Type: TC
Location: 13419 - 15185 (-)
Gene ID: HRGMv2_0896_32_11
Type: TF
Location: 15543 - 16547 (+)
Gene ID: HRGMv2_0896_32_12
Type: TC
Location: 16762 - 17100 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0896_32_8 vegetarian > omnivore 1.03645 0.02242

🧭 Explore Read Mapping of CGC

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