Cluster: HRGMv2_0896_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0896_20 | HRGMv2_0896_20_8 | 7133 | 8152 | + | 9.B.146.1.6 |
| pfam | HRGMv2_0896_20 | HRGMv2_0896_20_9 | 8162 | 9568 | + | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_0896_20 | HRGMv2_0896_20_10 | 9604 | 11097 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_0896_20 | HRGMv2_0896_20_11 | 11087 | 12202 | + | GT28 |
Gene ID: HRGMv2_0896_20_8
Type: TC
Location: 7133 - 8152 (+)
Type: TC
Location: 7133 - 8152 (+)
Gene ID: HRGMv2_0896_20_9
Type: pfam
Location: 8162 - 9568 (+)
Type: pfam
Location: 8162 - 9568 (+)
Gene ID: HRGMv2_0896_20_10
Type: TC
Location: 9604 - 11097 (+)
Type: TC
Location: 9604 - 11097 (+)
Gene ID: HRGMv2_0896_20_11
Type: CAZyme
Location: 11087 - 12202 (+)
Type: CAZyme
Location: 11087 - 12202 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AK
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.