Cluster: HRGMv2_0896_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0896_12 | HRGMv2_0896_12_22 | 21166 | 22524 | - | 2.A.33.1.1 |
| pfam | HRGMv2_0896_12 | HRGMv2_0896_12_23 | 22792 | 23715 | - | DHH | DHHA2 |
| STP | HRGMv2_0896_12 | HRGMv2_0896_12_24 | 23884 | 24837 | - | Glucokinase |
| TC | HRGMv2_0896_12 | HRGMv2_0896_12_25 | 25079 | 25411 | - | 4.A.3.2.3 |
| TC | HRGMv2_0896_12 | HRGMv2_0896_12_26 | 25421 | 25723 | - | 4.A.3.2.9 |
| TC | HRGMv2_0896_12 | HRGMv2_0896_12_27 | 25882 | 27225 | - | 4.A.3.2.9 |
| CAZyme | HRGMv2_0896_12 | HRGMv2_0896_12_28 | 27346 | 28746 | - | GH1 |
Gene ID: HRGMv2_0896_12_22
Type: TC
Location: 21166 - 22524 (-)
Type: TC
Location: 21166 - 22524 (-)
Gene ID: HRGMv2_0896_12_23
Type: pfam
Location: 22792 - 23715 (-)
Type: pfam
Location: 22792 - 23715 (-)
Gene ID: HRGMv2_0896_12_24
Type: STP
Location: 23884 - 24837 (-)
Type: STP
Location: 23884 - 24837 (-)
Gene ID: HRGMv2_0896_12_25
Type: TC
Location: 25079 - 25411 (-)
Type: TC
Location: 25079 - 25411 (-)
Gene ID: HRGMv2_0896_12_26
Type: TC
Location: 25421 - 25723 (-)
Type: TC
Location: 25421 - 25723 (-)
Gene ID: HRGMv2_0896_12_27
Type: TC
Location: 25882 - 27225 (-)
Type: TC
Location: 25882 - 27225 (-)
Gene ID: HRGMv2_0896_12_28
Type: CAZyme
Location: 27346 - 28746 (-)
Type: CAZyme
Location: 27346 - 28746 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AK
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0896_12_26 | vegan > omnivore | 1.00040 | 0.00701 |