Cluster: HRGMv2_0896_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0896_7 | HRGMv2_0896_7_17 | 19850 | 22066 | + | 9.B.97.5.1 |
| TC | HRGMv2_0896_7 | HRGMv2_0896_7_18 | 22584 | 23846 | - | 2.A.55.3.6 |
| STP | HRGMv2_0896_7 | HRGMv2_0896_7_19 | 23855 | 25699 | - | CBS | CBS |
| CAZyme | HRGMv2_0896_7 | HRGMv2_0896_7_20 | 26028 | 27434 | - | CE4 |
Gene ID: HRGMv2_0896_7_17
Type: TC
Location: 19850 - 22066 (+)
Type: TC
Location: 19850 - 22066 (+)
Gene ID: HRGMv2_0896_7_18
Type: TC
Location: 22584 - 23846 (-)
Type: TC
Location: 22584 - 23846 (-)
Gene ID: HRGMv2_0896_7_19
Type: STP
Location: 23855 - 25699 (-)
Type: STP
Location: 23855 - 25699 (-)
Gene ID: HRGMv2_0896_7_20
Type: CAZyme
Location: 26028 - 27434 (-)
Type: CAZyme
Location: 26028 - 27434 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AK
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.