Cluster: HRGMv2_0896_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0896_5 | HRGMv2_0896_5_1 | 274 | 2634 | + | 9.A.8.1.6 |
| TC | HRGMv2_0896_5 | HRGMv2_0896_5_2 | 2758 | 3954 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_0896_5 | HRGMv2_0896_5_3 | 4061 | 5437 | + | GH13_20 |
Gene ID: HRGMv2_0896_5_1
Type: TC
Location: 274 - 2634 (+)
Type: TC
Location: 274 - 2634 (+)
Gene ID: HRGMv2_0896_5_2
Type: TC
Location: 2758 - 3954 (+)
Type: TC
Location: 2758 - 3954 (+)
Gene ID: HRGMv2_0896_5_3
Type: CAZyme
Location: 4061 - 5437 (+)
Type: CAZyme
Location: 4061 - 5437 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AK
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.