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Cluster: HRGMv2_0896_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0896_3 HRGMv2_0896_3_25 28092 30467 - 3.A.3.5.15
STP HRGMv2_0896_3 HRGMv2_0896_3_26 30718 32802 - Pkinase
STP HRGMv2_0896_3 HRGMv2_0896_3_27 32974 33936 - FHA
TC HRGMv2_0896_3 HRGMv2_0896_3_28 34525 36768 + 1.I.1.1.3
STP HRGMv2_0896_3 HRGMv2_0896_3_29 37390 38151 + Fer4 | Fer4
TC HRGMv2_0896_3 HRGMv2_0896_3_30 38496 39008 + 4.A.1.2.5
pfam HRGMv2_0896_3 HRGMv2_0896_3_31 39015 39881 + PRD | PRD | CAT_RBD
TC HRGMv2_0896_3 HRGMv2_0896_3_32 39981 41597 + 4.A.1.1.3
CAZyme HRGMv2_0896_3 HRGMv2_0896_3_33 41601 42983 + GH4
Gene ID: HRGMv2_0896_3_25
Type: TC
Location: 28092 - 30467 (-)
Gene ID: HRGMv2_0896_3_26
Type: STP
Location: 30718 - 32802 (-)
Gene ID: HRGMv2_0896_3_27
Type: STP
Location: 32974 - 33936 (-)
Gene ID: HRGMv2_0896_3_28
Type: TC
Location: 34525 - 36768 (+)
Gene ID: HRGMv2_0896_3_29
Type: STP
Location: 37390 - 38151 (+)
Gene ID: HRGMv2_0896_3_30
Type: TC
Location: 38496 - 39008 (+)
Gene ID: HRGMv2_0896_3_31
Type: pfam
Location: 39015 - 39881 (+)
Gene ID: HRGMv2_0896_3_32
Type: TC
Location: 39981 - 41597 (+)
Gene ID: HRGMv2_0896_3_33
Type: CAZyme
Location: 41601 - 42983 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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