Cluster: HRGMv2_0896_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0896_109 | HRGMv2_0896_109_3 | 1851 | 2975 | - | GH172 |
| pfam | HRGMv2_0896_109 | HRGMv2_0896_109_4 | 2988 | 3386 | - | EIIA-man |
| TC | HRGMv2_0896_109 | HRGMv2_0896_109_5 | 3413 | 4246 | - | 4.A.6.1.13 |
| TC | HRGMv2_0896_109 | HRGMv2_0896_109_6 | 4249 | 4926 | - | 4.A.6.1.13 |
Gene ID: HRGMv2_0896_109_3
Type: CAZyme
Location: 1851 - 2975 (-)
Type: CAZyme
Location: 1851 - 2975 (-)
Gene ID: HRGMv2_0896_109_4
Type: pfam
Location: 2988 - 3386 (-)
Type: pfam
Location: 2988 - 3386 (-)
Gene ID: HRGMv2_0896_109_5
Type: TC
Location: 3413 - 4246 (-)
Type: TC
Location: 3413 - 4246 (-)
Gene ID: HRGMv2_0896_109_6
Type: TC
Location: 4249 - 4926 (-)
Type: TC
Location: 4249 - 4926 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AK
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.