Cluster: HRGMv2_0896_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0896_46 | HRGMv2_0896_46_1 | 501 | 1955 | - | GH1 |
| TC | HRGMv2_0896_46 | HRGMv2_0896_46_2 | 1957 | 3306 | - | 4.A.3.2.6 |
| TC | HRGMv2_0896_46 | HRGMv2_0896_46_3 | 3316 | 3609 | - | 4.A.3.2.6 |
| TC | HRGMv2_0896_46 | HRGMv2_0896_46_4 | 3656 | 3982 | - | 4.A.3.2.7 |
Gene ID: HRGMv2_0896_46_1
Type: CAZyme
Location: 501 - 1955 (-)
Type: CAZyme
Location: 501 - 1955 (-)
Gene ID: HRGMv2_0896_46_2
Type: TC
Location: 1957 - 3306 (-)
Type: TC
Location: 1957 - 3306 (-)
Gene ID: HRGMv2_0896_46_3
Type: TC
Location: 3316 - 3609 (-)
Type: TC
Location: 3316 - 3609 (-)
Gene ID: HRGMv2_0896_46_4
Type: TC
Location: 3656 - 3982 (-)
Type: TC
Location: 3656 - 3982 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AK
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0896_46_1 | vegetarian > vegan | 2.19593 | 0.02814 |
| HRGMv2_0896_46_2 | vegetarian > vegan | 1.88905 | 0.03651 |
| HRGMv2_0896_46_3 | vegetarian > vegan | 2.13856 | 0.03651 |
| HRGMv2_0896_46_4 | vegetarian > vegan | 1.39414 | 0.04582 |