Cluster: HRGMv2_0896_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0896_41 | HRGMv2_0896_41_15 | 16344 | 17111 | - | 3.A.1.103.1 |
| TC | HRGMv2_0896_41 | HRGMv2_0896_41_16 | 17123 | 17968 | - | 3.A.1.103.6 |
| CAZyme | HRGMv2_0896_41 | HRGMv2_0896_41_17 | 18129 | 18677 | + | GT81 |
Gene ID: HRGMv2_0896_41_15
Type: TC
Location: 16344 - 17111 (-)
Type: TC
Location: 16344 - 17111 (-)
Gene ID: HRGMv2_0896_41_16
Type: TC
Location: 17123 - 17968 (-)
Type: TC
Location: 17123 - 17968 (-)
Gene ID: HRGMv2_0896_41_17
Type: CAZyme
Location: 18129 - 18677 (+)
Type: CAZyme
Location: 18129 - 18677 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AK
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.