Cluster: HRGMv2_0896_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0896_35 | HRGMv2_0896_35_7 | 6958 | 9966 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_0896_35 | HRGMv2_0896_35_8 | 9970 | 10425 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0896_35 | HRGMv2_0896_35_9 | 10579 | 12042 | + | 2.A.3.7.4 |
| STP | HRGMv2_0896_35 | HRGMv2_0896_35_10 | 12464 | 12712 | + | PTS-HPr |
| STP | HRGMv2_0896_35 | HRGMv2_0896_35_11 | 12901 | 13143 | + | FeoA |
| TC | HRGMv2_0896_35 | HRGMv2_0896_35_12 | 13183 | 13404 | + | 9.A.8.1.6 |
| TC | HRGMv2_0896_35 | HRGMv2_0896_35_13 | 13528 | 15855 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_0896_35_7
Type: CAZyme
Location: 6958 - 9966 (+)
Type: CAZyme
Location: 6958 - 9966 (+)
Gene ID: HRGMv2_0896_35_8
Type:
Location: 9970 - 10425 (+)
Type:
Location: 9970 - 10425 (+)
Gene ID: HRGMv2_0896_35_9
Type: TC
Location: 10579 - 12042 (+)
Type: TC
Location: 10579 - 12042 (+)
Gene ID: HRGMv2_0896_35_10
Type: STP
Location: 12464 - 12712 (+)
Type: STP
Location: 12464 - 12712 (+)
Gene ID: HRGMv2_0896_35_11
Type: STP
Location: 12901 - 13143 (+)
Type: STP
Location: 12901 - 13143 (+)
Gene ID: HRGMv2_0896_35_12
Type: TC
Location: 13183 - 13404 (+)
Type: TC
Location: 13183 - 13404 (+)
Gene ID: HRGMv2_0896_35_13
Type: TC
Location: 13528 - 15855 (+)
Type: TC
Location: 13528 - 15855 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AK
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.