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Cluster: HRGMv2_0895_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0895_1 HRGMv2_0895_1_97 101686 102855 - CE9
STP HRGMv2_0895_1 HRGMv2_0895_1_98 102973 104139 - SIS | SIS
TF HRGMv2_0895_1 HRGMv2_0895_1_99 104254 104985 - GntR
TC HRGMv2_0895_1 HRGMv2_0895_1_100 105170 106252 - 4.A.6.1.4
TC HRGMv2_0895_1 HRGMv2_0895_1_101 106242 107042 - 4.A.6.1.4
TC HRGMv2_0895_1 HRGMv2_0895_1_102 107133 107615 - 4.A.6.1.4
pfam HRGMv2_0895_1 HRGMv2_0895_1_103 107652 107933 - YajC
TC HRGMv2_0895_1 HRGMv2_0895_1_104 107933 108376 - 4.A.6.1.16
Gene ID: HRGMv2_0895_1_97
Type: CAZyme
Location: 101686 - 102855 (-)
Gene ID: HRGMv2_0895_1_98
Type: STP
Location: 102973 - 104139 (-)
Gene ID: HRGMv2_0895_1_99
Type: TF
Location: 104254 - 104985 (-)
Gene ID: HRGMv2_0895_1_100
Type: TC
Location: 105170 - 106252 (-)
Gene ID: HRGMv2_0895_1_101
Type: TC
Location: 106242 - 107042 (-)
Gene ID: HRGMv2_0895_1_102
Type: TC
Location: 107133 - 107615 (-)
Gene ID: HRGMv2_0895_1_103
Type: pfam
Location: 107652 - 107933 (-)
Gene ID: HRGMv2_0895_1_104
Type: TC
Location: 107933 - 108376 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0895_1_103 vegan > omnivore 1.04606 0.00442

🧭 Explore Read Mapping of CGC

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