Cluster: HRGMv2_0893_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0893
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0893_5 | HRGMv2_0893_5_117 | 125280 | 127607 | - | 9.A.8.1.6 |
| TC | HRGMv2_0893_5 | HRGMv2_0893_5_118 | 127731 | 127952 | - | 9.A.8.1.6 |
| STP | HRGMv2_0893_5 | HRGMv2_0893_5_119 | 127992 | 128234 | - | FeoA |
| STP | HRGMv2_0893_5 | HRGMv2_0893_5_120 | 128471 | 128719 | - | PTS-HPr |
| TC | HRGMv2_0893_5 | HRGMv2_0893_5_121 | 129141 | 130604 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | HRGMv2_0893_5 | HRGMv2_0893_5_122 | 130758 | 131213 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0893_5 | HRGMv2_0893_5_123 | 131217 | 134225 | - | GH2 |
Gene ID: HRGMv2_0893_5_117
Type: TC
Location: 125280 - 127607 (-)
Type: TC
Location: 125280 - 127607 (-)
Gene ID: HRGMv2_0893_5_118
Type: TC
Location: 127731 - 127952 (-)
Type: TC
Location: 127731 - 127952 (-)
Gene ID: HRGMv2_0893_5_119
Type: STP
Location: 127992 - 128234 (-)
Type: STP
Location: 127992 - 128234 (-)
Gene ID: HRGMv2_0893_5_120
Type: STP
Location: 128471 - 128719 (-)
Type: STP
Location: 128471 - 128719 (-)
Gene ID: HRGMv2_0893_5_121
Type: TC
Location: 129141 - 130604 (-)
Type: TC
Location: 129141 - 130604 (-)
Gene ID: HRGMv2_0893_5_122
Type:
Location: 130758 - 131213 (-)
Type:
Location: 130758 - 131213 (-)
Gene ID: HRGMv2_0893_5_123
Type: CAZyme
Location: 131217 - 134225 (-)
Type: CAZyme
Location: 131217 - 134225 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.