Cluster: HRGMv2_0893_CGC15
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0893
- CGC Family ID: CGCFAM_00398
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0893_12 | HRGMv2_0893_12_23 | 27439 | 28458 | - | GT2 |
| pfam | HRGMv2_0893_12 | HRGMv2_0893_12_24 | 28629 | 29759 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_0893_12 | HRGMv2_0893_12_25 | 29872 | 30975 | + | GT2 |
| CAZyme | HRGMv2_0893_12 | HRGMv2_0893_12_26 | 30982 | 32022 | + | GT2 |
| CAZyme | HRGMv2_0893_12 | HRGMv2_0893_12_27 | 32097 | 33215 | + | GT2 |
| CAZyme | HRGMv2_0893_12 | HRGMv2_0893_12_28 | 33228 | 34295 | + | GT2 |
| pfam | HRGMv2_0893_12 | HRGMv2_0893_12_29 | 34556 | 36049 | + | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_2 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 |
| pfam | HRGMv2_0893_12 | HRGMv2_0893_12_30 | 36205 | 38340 | + | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 |
| CAZyme | HRGMv2_0893_12 | HRGMv2_0893_12_31 | 38604 | 40334 | + | GH25 |
| pfam | HRGMv2_0893_12 | HRGMv2_0893_12_32 | 40435 | 42576 | + | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Peptidase_C39_2 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 |
| TC | HRGMv2_0893_12 | HRGMv2_0893_12_33 | 42638 | 43579 | - | 2.A.7.18.1 |
Gene ID: HRGMv2_0893_12_23
Type: CAZyme
Location: 27439 - 28458 (-)
Type: CAZyme
Location: 27439 - 28458 (-)
Gene ID: HRGMv2_0893_12_24
Type: pfam
Location: 28629 - 29759 (-)
Type: pfam
Location: 28629 - 29759 (-)
Gene ID: HRGMv2_0893_12_25
Type: CAZyme
Location: 29872 - 30975 (+)
Type: CAZyme
Location: 29872 - 30975 (+)
Gene ID: HRGMv2_0893_12_26
Type: CAZyme
Location: 30982 - 32022 (+)
Type: CAZyme
Location: 30982 - 32022 (+)
Gene ID: HRGMv2_0893_12_27
Type: CAZyme
Location: 32097 - 33215 (+)
Type: CAZyme
Location: 32097 - 33215 (+)
Gene ID: HRGMv2_0893_12_28
Type: CAZyme
Location: 33228 - 34295 (+)
Type: CAZyme
Location: 33228 - 34295 (+)
Gene ID: HRGMv2_0893_12_29
Type: pfam
Location: 34556 - 36049 (+)
Type: pfam
Location: 34556 - 36049 (+)
Gene ID: HRGMv2_0893_12_30
Type: pfam
Location: 36205 - 38340 (+)
Type: pfam
Location: 36205 - 38340 (+)
Gene ID: HRGMv2_0893_12_31
Type: CAZyme
Location: 38604 - 40334 (+)
Type: CAZyme
Location: 38604 - 40334 (+)
Gene ID: HRGMv2_0893_12_32
Type: pfam
Location: 40435 - 42576 (+)
Type: pfam
Location: 40435 - 42576 (+)
Gene ID: HRGMv2_0893_12_33
Type: TC
Location: 42638 - 43579 (-)
Type: TC
Location: 42638 - 43579 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0893_12_24 | vegan > omnivore | 1.89321 | 0.01560 |
| HRGMv2_0893_12_24 | vegetarian > omnivore | 1.62798 | 0.04449 |