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Cluster: HRGMv2_0892_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0892_2 HRGMv2_0892_2_105 112729 114129 + GH1
TC HRGMv2_0892_2 HRGMv2_0892_2_106 114250 115593 + 4.A.3.2.2
TC HRGMv2_0892_2 HRGMv2_0892_2_107 115754 116056 + 4.A.3.2.9
TC HRGMv2_0892_2 HRGMv2_0892_2_108 116066 116398 + 4.A.3.2.3
STP HRGMv2_0892_2 HRGMv2_0892_2_109 116640 117593 + Glucokinase
pfam HRGMv2_0892_2 HRGMv2_0892_2_110 117721 118644 + DHH | DHHA2
TC HRGMv2_0892_2 HRGMv2_0892_2_111 118912 120270 + 2.A.33.1.1
Gene ID: HRGMv2_0892_2_105
Type: CAZyme
Location: 112729 - 114129 (+)
Gene ID: HRGMv2_0892_2_106
Type: TC
Location: 114250 - 115593 (+)
Gene ID: HRGMv2_0892_2_107
Type: TC
Location: 115754 - 116056 (+)
Gene ID: HRGMv2_0892_2_108
Type: TC
Location: 116066 - 116398 (+)
Gene ID: HRGMv2_0892_2_109
Type: STP
Location: 116640 - 117593 (+)
Gene ID: HRGMv2_0892_2_110
Type: pfam
Location: 117721 - 118644 (+)
Gene ID: HRGMv2_0892_2_111
Type: TC
Location: 118912 - 120270 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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