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Cluster: HRGMv2_0892_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0892_2 HRGMv2_0892_2_12 15512 17962 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_0892_2 HRGMv2_0892_2_13 17984 18103 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0892_2 HRGMv2_0892_2_14 18187 18906 + GntR
TC HRGMv2_0892_2 HRGMv2_0892_2_15 19213 20529 + 3.A.1.1.45
TC HRGMv2_0892_2 HRGMv2_0892_2_16 20617 21471 + 3.A.1.1.45
TC HRGMv2_0892_2 HRGMv2_0892_2_17 21471 22310 + 3.A.1.1.45
TC HRGMv2_0892_2 HRGMv2_0892_2_18 22379 23578 + 3.A.1.1.22
CAZyme HRGMv2_0892_2 HRGMv2_0892_2_19 24034 26301 - GT35
CAZyme HRGMv2_0892_2 HRGMv2_0892_2_20 26430 27935 - GH77
Gene ID: HRGMv2_0892_2_12
Type: TC
Location: 15512 - 17962 (-)
Gene ID: HRGMv2_0892_2_13
Type:
Location: 17984 - 18103 (+)
Gene ID: HRGMv2_0892_2_14
Type: TF
Location: 18187 - 18906 (+)
Gene ID: HRGMv2_0892_2_15
Type: TC
Location: 19213 - 20529 (+)
Gene ID: HRGMv2_0892_2_16
Type: TC
Location: 20617 - 21471 (+)
Gene ID: HRGMv2_0892_2_17
Type: TC
Location: 21471 - 22310 (+)
Gene ID: HRGMv2_0892_2_18
Type: TC
Location: 22379 - 23578 (+)
Gene ID: HRGMv2_0892_2_19
Type: CAZyme
Location: 24034 - 26301 (-)
Gene ID: HRGMv2_0892_2_20
Type: CAZyme
Location: 26430 - 27935 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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