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Cluster: HRGMv2_0890_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0890_2 HRGMv2_0890_2_215 261997 263166 - CE9
STP HRGMv2_0890_2 HRGMv2_0890_2_216 263284 264450 - SIS | SIS
TF HRGMv2_0890_2 HRGMv2_0890_2_217 264565 265296 - GntR
TC HRGMv2_0890_2 HRGMv2_0890_2_218 265482 266564 - 4.A.6.1.4
TC HRGMv2_0890_2 HRGMv2_0890_2_219 266554 267354 - 4.A.6.1.4
TC HRGMv2_0890_2 HRGMv2_0890_2_220 267445 267927 - 4.A.6.1.4
pfam HRGMv2_0890_2 HRGMv2_0890_2_221 267964 268245 - YajC
TC HRGMv2_0890_2 HRGMv2_0890_2_222 268245 268688 - 4.A.6.1.16
Gene ID: HRGMv2_0890_2_215
Type: CAZyme
Location: 261997 - 263166 (-)
Gene ID: HRGMv2_0890_2_216
Type: STP
Location: 263284 - 264450 (-)
Gene ID: HRGMv2_0890_2_217
Type: TF
Location: 264565 - 265296 (-)
Gene ID: HRGMv2_0890_2_218
Type: TC
Location: 265482 - 266564 (-)
Gene ID: HRGMv2_0890_2_219
Type: TC
Location: 266554 - 267354 (-)
Gene ID: HRGMv2_0890_2_220
Type: TC
Location: 267445 - 267927 (-)
Gene ID: HRGMv2_0890_2_221
Type: pfam
Location: 267964 - 268245 (-)
Gene ID: HRGMv2_0890_2_222
Type: TC
Location: 268245 - 268688 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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