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Cluster: HRGMv2_0890_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0890_2 HRGMv2_0890_2_178 219059 219397 - 4.A.3.1.2
TF HRGMv2_0890_2 HRGMv2_0890_2_179 219612 220616 - LacI
TC HRGMv2_0890_2 HRGMv2_0890_2_180 220971 222746 + 4.A.3.1.1
CAZyme HRGMv2_0890_2 HRGMv2_0890_2_181 222813 224252 + GH1
TF HRGMv2_0890_2 HRGMv2_0890_2_182 224515 225552 - LacI
CAZyme HRGMv2_0890_2 HRGMv2_0890_2_183 225894 227336 + GH1
TC HRGMv2_0890_2 HRGMv2_0890_2_184 227513 229273 + 4.A.3.1.1
TF HRGMv2_0890_2 HRGMv2_0890_2_185 229607 230608 - LacI
TC HRGMv2_0890_2 HRGMv2_0890_2_186 230893 232671 + 4.A.3.1.1
CAZyme HRGMv2_0890_2 HRGMv2_0890_2_187 232748 234169 + GH1
pfam HRGMv2_0890_2 HRGMv2_0890_2_188 234535 235767 + Fic
STP HRGMv2_0890_2 HRGMv2_0890_2_189 235816 236145 - DeoRC
TC HRGMv2_0890_2 HRGMv2_0890_2_190 236308 238002 - 4.A.3.1.1
Gene ID: HRGMv2_0890_2_178
Type: TC
Location: 219059 - 219397 (-)
Gene ID: HRGMv2_0890_2_179
Type: TF
Location: 219612 - 220616 (-)
Gene ID: HRGMv2_0890_2_180
Type: TC
Location: 220971 - 222746 (+)
Gene ID: HRGMv2_0890_2_181
Type: CAZyme
Location: 222813 - 224252 (+)
Gene ID: HRGMv2_0890_2_182
Type: TF
Location: 224515 - 225552 (-)
Gene ID: HRGMv2_0890_2_183
Type: CAZyme
Location: 225894 - 227336 (+)
Gene ID: HRGMv2_0890_2_184
Type: TC
Location: 227513 - 229273 (+)
Gene ID: HRGMv2_0890_2_185
Type: TF
Location: 229607 - 230608 (-)
Gene ID: HRGMv2_0890_2_186
Type: TC
Location: 230893 - 232671 (+)
Gene ID: HRGMv2_0890_2_187
Type: CAZyme
Location: 232748 - 234169 (+)
Gene ID: HRGMv2_0890_2_188
Type: pfam
Location: 234535 - 235767 (+)
Gene ID: HRGMv2_0890_2_189
Type: STP
Location: 235816 - 236145 (-)
Gene ID: HRGMv2_0890_2_190
Type: TC
Location: 236308 - 238002 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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