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Cluster: HRGMv2_0890_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0890_2 HRGMv2_0890_2_12 15840 17216 - GH13_20
TC HRGMv2_0890_2 HRGMv2_0890_2_13 17370 18566 - 2.A.1.2.18
NULL(UNKNOWN) HRGMv2_0890_2 HRGMv2_0890_2_14 18742 19494 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0890_2 HRGMv2_0890_2_15 19660 21033 - GH4
TF HRGMv2_0890_2 HRGMv2_0890_2_16 21209 21961 + HTH_6
TC HRGMv2_0890_2 HRGMv2_0890_2_17 22024 23688 - 4.A.1.1.3
TC HRGMv2_0890_2 HRGMv2_0890_2_18 24003 26363 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_0890_2 HRGMv2_0890_2_19 26485 26805 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0890_2 HRGMv2_0890_2_20 27264 28727 - 2.A.3.2.3
Gene ID: HRGMv2_0890_2_12
Type: CAZyme
Location: 15840 - 17216 (-)
Gene ID: HRGMv2_0890_2_13
Type: TC
Location: 17370 - 18566 (-)
Gene ID: HRGMv2_0890_2_14
Type:
Location: 18742 - 19494 (-)
Gene ID: HRGMv2_0890_2_15
Type: CAZyme
Location: 19660 - 21033 (-)
Gene ID: HRGMv2_0890_2_16
Type: TF
Location: 21209 - 21961 (+)
Gene ID: HRGMv2_0890_2_17
Type: TC
Location: 22024 - 23688 (-)
Gene ID: HRGMv2_0890_2_18
Type: TC
Location: 24003 - 26363 (-)
Gene ID: HRGMv2_0890_2_19
Type:
Location: 26485 - 26805 (-)
Gene ID: HRGMv2_0890_2_20
Type: TC
Location: 27264 - 28727 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0890_2_14 vegan > omnivore 1.62878 0.00701
HRGMv2_0890_2_15 vegan > omnivore 1.44058 0.00701
HRGMv2_0890_2_20 vegan > omnivore 1.29675 0.00701

🧭 Explore Read Mapping of CGC

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