dbCAN Logo

Cluster: HRGMv2_0890_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0890_22 HRGMv2_0890_22_1 2 1537 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_0890_22 HRGMv2_0890_22_2 1559 1678 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0890_22 HRGMv2_0890_22_3 1762 2481 + GntR
TC HRGMv2_0890_22 HRGMv2_0890_22_4 2788 4104 + 3.A.1.1.45
TC HRGMv2_0890_22 HRGMv2_0890_22_5 4192 5046 + 3.A.1.1.45
TC HRGMv2_0890_22 HRGMv2_0890_22_6 5046 5885 + 3.A.1.1.45
TC HRGMv2_0890_22 HRGMv2_0890_22_7 5954 7153 + 3.A.1.1.22
CAZyme HRGMv2_0890_22 HRGMv2_0890_22_8 7527 9794 - GT35
CAZyme HRGMv2_0890_22 HRGMv2_0890_22_9 9924 11429 - GH77
Gene ID: HRGMv2_0890_22_1
Type: TC
Location: 2 - 1537 (-)
Gene ID: HRGMv2_0890_22_2
Type:
Location: 1559 - 1678 (+)
Gene ID: HRGMv2_0890_22_3
Type: TF
Location: 1762 - 2481 (+)
Gene ID: HRGMv2_0890_22_4
Type: TC
Location: 2788 - 4104 (+)
Gene ID: HRGMv2_0890_22_5
Type: TC
Location: 4192 - 5046 (+)
Gene ID: HRGMv2_0890_22_6
Type: TC
Location: 5046 - 5885 (+)
Gene ID: HRGMv2_0890_22_7
Type: TC
Location: 5954 - 7153 (+)
Gene ID: HRGMv2_0890_22_8
Type: CAZyme
Location: 7527 - 9794 (-)
Gene ID: HRGMv2_0890_22_9
Type: CAZyme
Location: 9924 - 11429 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List