Cluster: HRGMv2_0889_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0889
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0889_16 | HRGMv2_0889_16_1 | 356 | 1810 | - | GH1 |
| TC | HRGMv2_0889_16 | HRGMv2_0889_16_2 | 1812 | 3161 | - | 4.A.3.2.6 |
| TC | HRGMv2_0889_16 | HRGMv2_0889_16_3 | 3171 | 3464 | - | 4.A.3.2.6 |
| TC | HRGMv2_0889_16 | HRGMv2_0889_16_4 | 3511 | 3837 | - | 4.A.3.2.7 |
Gene ID: HRGMv2_0889_16_1
Type: CAZyme
Location: 356 - 1810 (-)
Type: CAZyme
Location: 356 - 1810 (-)
Gene ID: HRGMv2_0889_16_2
Type: TC
Location: 1812 - 3161 (-)
Type: TC
Location: 1812 - 3161 (-)
Gene ID: HRGMv2_0889_16_3
Type: TC
Location: 3171 - 3464 (-)
Type: TC
Location: 3171 - 3464 (-)
Gene ID: HRGMv2_0889_16_4
Type: TC
Location: 3511 - 3837 (-)
Type: TC
Location: 3511 - 3837 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0889_16_1 | vegetarian > vegan | 2.09849 | 0.02517 |
| HRGMv2_0889_16_2 | vegetarian > vegan | 1.85734 | 0.02517 |
| HRGMv2_0889_16_3 | vegetarian > vegan | 2.12937 | 0.02517 |
| HRGMv2_0889_16_4 | vegetarian > vegan | 1.36653 | 0.02517 |