Cluster: HRGMv2_0889_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0889
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0889_14 | HRGMv2_0889_14_6 | 6124 | 7110 | - | GT2 |
| CAZyme | HRGMv2_0889_14 | HRGMv2_0889_14_7 | 7110 | 8102 | - | GT2 |
| pfam | HRGMv2_0889_14 | HRGMv2_0889_14_8 | 8102 | 9214 | - | EpsG |
| CAZyme | HRGMv2_0889_14 | HRGMv2_0889_14_9 | 9211 | 10224 | - | GT2 |
| CAZyme | HRGMv2_0889_14 | HRGMv2_0889_14_10 | 10225 | 11331 | - | GT4 |
| TC | HRGMv2_0889_14 | HRGMv2_0889_14_11 | 11332 | 12123 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_0889_14_6
Type: CAZyme
Location: 6124 - 7110 (-)
Type: CAZyme
Location: 6124 - 7110 (-)
Gene ID: HRGMv2_0889_14_7
Type: CAZyme
Location: 7110 - 8102 (-)
Type: CAZyme
Location: 7110 - 8102 (-)
Gene ID: HRGMv2_0889_14_8
Type: pfam
Location: 8102 - 9214 (-)
Type: pfam
Location: 8102 - 9214 (-)
Gene ID: HRGMv2_0889_14_9
Type: CAZyme
Location: 9211 - 10224 (-)
Type: CAZyme
Location: 9211 - 10224 (-)
Gene ID: HRGMv2_0889_14_10
Type: CAZyme
Location: 10225 - 11331 (-)
Type: CAZyme
Location: 10225 - 11331 (-)
Gene ID: HRGMv2_0889_14_11
Type: TC
Location: 11332 - 12123 (-)
Type: TC
Location: 11332 - 12123 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.