Cluster: HRGMv2_0889_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0889
- CGC Family ID: CGCFAM_00019
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0889_4 | HRGMv2_0889_4_152 | 185758 | 187140 | - | GH4 |
| TC | HRGMv2_0889_4 | HRGMv2_0889_4_153 | 187144 | 188760 | - | 4.A.1.1.3 |
| pfam | HRGMv2_0889_4 | HRGMv2_0889_4_154 | 188860 | 189726 | - | PRD | PRD | CAT_RBD |
| TC | HRGMv2_0889_4 | HRGMv2_0889_4_155 | 189733 | 190245 | - | 4.A.1.2.2 |
| TC | HRGMv2_0889_4 | HRGMv2_0889_4_156 | 190708 | 192909 | - | 1.I.1.1.3 |
| TC | HRGMv2_0889_4 | HRGMv2_0889_4_157 | 193480 | 195819 | + | 3.A.3.5.15 |
Gene ID: HRGMv2_0889_4_152
Type: CAZyme
Location: 185758 - 187140 (-)
Type: CAZyme
Location: 185758 - 187140 (-)
Gene ID: HRGMv2_0889_4_153
Type: TC
Location: 187144 - 188760 (-)
Type: TC
Location: 187144 - 188760 (-)
Gene ID: HRGMv2_0889_4_154
Type: pfam
Location: 188860 - 189726 (-)
Type: pfam
Location: 188860 - 189726 (-)
Gene ID: HRGMv2_0889_4_155
Type: TC
Location: 189733 - 190245 (-)
Type: TC
Location: 189733 - 190245 (-)
Gene ID: HRGMv2_0889_4_156
Type: TC
Location: 190708 - 192909 (-)
Type: TC
Location: 190708 - 192909 (-)
Gene ID: HRGMv2_0889_4_157
Type: TC
Location: 193480 - 195819 (+)
Type: TC
Location: 193480 - 195819 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.