Cluster: HRGMv2_0889_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0889
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0889_4 | HRGMv2_0889_4_2 | 626 | 1867 | + | GT111 |
| CAZyme | HRGMv2_0889_4 | HRGMv2_0889_4_3 | 1943 | 4342 | + | GT2 | GT2 |
| pfam | HRGMv2_0889_4 | HRGMv2_0889_4_4 | 4421 | 6604 | - | DUF7654 | DUF7657 |
| pfam | HRGMv2_0889_4 | HRGMv2_0889_4_5 | 6631 | 6987 | - | DUF2304 |
| CAZyme | HRGMv2_0889_4 | HRGMv2_0889_4_6 | 6984 | 7718 | - | GT2 |
| CAZyme | HRGMv2_0889_4 | HRGMv2_0889_4_7 | 7724 | 8965 | - | GT4 |
| pfam | HRGMv2_0889_4 | HRGMv2_0889_4_8 | 8965 | 10140 | - | Epimerase_2 |
| CAZyme | HRGMv2_0889_4 | HRGMv2_0889_4_9 | 10162 | 11226 | - | GT4 |
| pfam | HRGMv2_0889_4 | HRGMv2_0889_4_10 | 11286 | 12503 | - | Epimerase | Polysacc_synt_C |
| TC | HRGMv2_0889_4 | HRGMv2_0889_4_11 | 12505 | 13560 | - | 9.B.18.2.1 |
| NULL(UNKNOWN) | HRGMv2_0889_4 | HRGMv2_0889_4_12 | 13811 | 14308 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0889_4 | HRGMv2_0889_4_13 | 15049 | 17829 | - | GH73 |
Gene ID: HRGMv2_0889_4_2
Type: CAZyme
Location: 626 - 1867 (+)
Type: CAZyme
Location: 626 - 1867 (+)
Gene ID: HRGMv2_0889_4_3
Type: CAZyme
Location: 1943 - 4342 (+)
Type: CAZyme
Location: 1943 - 4342 (+)
Gene ID: HRGMv2_0889_4_4
Type: pfam
Location: 4421 - 6604 (-)
Type: pfam
Location: 4421 - 6604 (-)
Gene ID: HRGMv2_0889_4_5
Type: pfam
Location: 6631 - 6987 (-)
Type: pfam
Location: 6631 - 6987 (-)
Gene ID: HRGMv2_0889_4_6
Type: CAZyme
Location: 6984 - 7718 (-)
Type: CAZyme
Location: 6984 - 7718 (-)
Gene ID: HRGMv2_0889_4_7
Type: CAZyme
Location: 7724 - 8965 (-)
Type: CAZyme
Location: 7724 - 8965 (-)
Gene ID: HRGMv2_0889_4_8
Type: pfam
Location: 8965 - 10140 (-)
Type: pfam
Location: 8965 - 10140 (-)
Gene ID: HRGMv2_0889_4_9
Type: CAZyme
Location: 10162 - 11226 (-)
Type: CAZyme
Location: 10162 - 11226 (-)
Gene ID: HRGMv2_0889_4_10
Type: pfam
Location: 11286 - 12503 (-)
Type: pfam
Location: 11286 - 12503 (-)
Gene ID: HRGMv2_0889_4_11
Type: TC
Location: 12505 - 13560 (-)
Type: TC
Location: 12505 - 13560 (-)
Gene ID: HRGMv2_0889_4_12
Type:
Location: 13811 - 14308 (-)
Type:
Location: 13811 - 14308 (-)
Gene ID: HRGMv2_0889_4_13
Type: CAZyme
Location: 15049 - 17829 (-)
Type: CAZyme
Location: 15049 - 17829 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0889_4_2 | vegan > omnivore | 1.10362 | 0.03783 |
| HRGMv2_0889_4_2 | vegetarian > omnivore | 1.79147 | 0.02517 |
| HRGMv2_0889_4_3 | vegan > omnivore | 2.42718 | 0.03783 |
| HRGMv2_0889_4_3 | vegetarian > omnivore | 3.06276 | 0.03252 |
| HRGMv2_0889_4_5 | vegetarian > omnivore | 1.23044 | 0.03252 |
| HRGMv2_0889_4_6 | vegan > omnivore | 1.37341 | 0.03783 |
| HRGMv2_0889_4_6 | vegetarian > omnivore | 2.24657 | 0.03252 |
| HRGMv2_0889_4_7 | vegetarian > omnivore | 1.33139 | 0.03252 |
| HRGMv2_0889_4_10 | vegetarian > omnivore | 1.39293 | 0.03252 |
| HRGMv2_0889_4_10 | vegetarian > vegan | 1.67070 | 0.02517 |
| HRGMv2_0889_4_12 | vegan > omnivore | 1.46531 | 0.03783 |
| HRGMv2_0889_4_12 | vegetarian > omnivore | 2.23322 | 0.03252 |
| HRGMv2_0889_4_13 | vegan > omnivore | 1.51798 | 0.03783 |
| HRGMv2_0889_4_13 | vegetarian > omnivore | 2.09832 | 0.02517 |