Cluster: HRGMv2_0889_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0889
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0889_41 | HRGMv2_0889_41_75 | 91785 | 94001 | + | 9.B.97.5.1 |
| TC | HRGMv2_0889_41 | HRGMv2_0889_41_76 | 94548 | 95810 | - | 2.A.55.3.6 |
| STP | HRGMv2_0889_41 | HRGMv2_0889_41_77 | 95819 | 97663 | - | CBS | CBS |
| NULL(UNKNOWN) | HRGMv2_0889_41 | HRGMv2_0889_41_78 | 97702 | 98097 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0889_41 | HRGMv2_0889_41_79 | 97959 | 99365 | - | CE4 |
Gene ID: HRGMv2_0889_41_75
Type: TC
Location: 91785 - 94001 (+)
Type: TC
Location: 91785 - 94001 (+)
Gene ID: HRGMv2_0889_41_76
Type: TC
Location: 94548 - 95810 (-)
Type: TC
Location: 94548 - 95810 (-)
Gene ID: HRGMv2_0889_41_77
Type: STP
Location: 95819 - 97663 (-)
Type: STP
Location: 95819 - 97663 (-)
Gene ID: HRGMv2_0889_41_78
Type:
Location: 97702 - 98097 (+)
Type:
Location: 97702 - 98097 (+)
Gene ID: HRGMv2_0889_41_79
Type: CAZyme
Location: 97959 - 99365 (-)
Type: CAZyme
Location: 97959 - 99365 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.