Cluster: HRGMv2_0889_CGC20
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0889
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0889_35 | HRGMv2_0889_35_46 | 48020 | 48787 | - | 3.A.1.103.1 |
| TC | HRGMv2_0889_35 | HRGMv2_0889_35_47 | 48799 | 49644 | - | 3.A.1.103.6 |
| CAZyme | HRGMv2_0889_35 | HRGMv2_0889_35_48 | 49805 | 50776 | + | GT81 |
Gene ID: HRGMv2_0889_35_46
Type: TC
Location: 48020 - 48787 (-)
Type: TC
Location: 48020 - 48787 (-)
Gene ID: HRGMv2_0889_35_47
Type: TC
Location: 48799 - 49644 (-)
Type: TC
Location: 48799 - 49644 (-)
Gene ID: HRGMv2_0889_35_48
Type: CAZyme
Location: 49805 - 50776 (+)
Type: CAZyme
Location: 49805 - 50776 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.