Cluster: HRGMv2_0889_CGC18
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0889
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0889_30 | HRGMv2_0889_30_15 | 14601 | 15770 | - | CE9 |
| TF | HRGMv2_0889_30 | HRGMv2_0889_30_16 | 15914 | 16645 | - | GntR |
| TC | HRGMv2_0889_30 | HRGMv2_0889_30_17 | 16878 | 18368 | - | 4.A.1.1.7 |
Gene ID: HRGMv2_0889_30_15
Type: CAZyme
Location: 14601 - 15770 (-)
Type: CAZyme
Location: 14601 - 15770 (-)
Gene ID: HRGMv2_0889_30_16
Type: TF
Location: 15914 - 16645 (-)
Type: TF
Location: 15914 - 16645 (-)
Gene ID: HRGMv2_0889_30_17
Type: TC
Location: 16878 - 18368 (-)
Type: TC
Location: 16878 - 18368 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0889_30_16 | vegetarian > vegan | 3.23832 | 0.02517 |