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Cluster: HRGMv2_0889_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0889_29 HRGMv2_0889_29_21 14160 15581 - GH1
TC HRGMv2_0889_29 HRGMv2_0889_29_22 15657 17435 - 4.A.3.1.1
TF HRGMv2_0889_29 HRGMv2_0889_29_23 17719 18720 + LacI
TC HRGMv2_0889_29 HRGMv2_0889_29_24 18894 20654 - 4.A.3.1.1
CAZyme HRGMv2_0889_29 HRGMv2_0889_29_25 20831 22273 - GH1
TF HRGMv2_0889_29 HRGMv2_0889_29_26 22615 23652 + LacI
CAZyme HRGMv2_0889_29 HRGMv2_0889_29_27 23920 25359 - GH1
TC HRGMv2_0889_29 HRGMv2_0889_29_28 25426 27204 - 4.A.3.1.1
TF HRGMv2_0889_29 HRGMv2_0889_29_29 27528 28562 + LacI
TC HRGMv2_0889_29 HRGMv2_0889_29_30 28777 29115 + 4.A.3.1.2
Gene ID: HRGMv2_0889_29_21
Type: CAZyme
Location: 14160 - 15581 (-)
Gene ID: HRGMv2_0889_29_22
Type: TC
Location: 15657 - 17435 (-)
Gene ID: HRGMv2_0889_29_23
Type: TF
Location: 17719 - 18720 (+)
Gene ID: HRGMv2_0889_29_24
Type: TC
Location: 18894 - 20654 (-)
Gene ID: HRGMv2_0889_29_25
Type: CAZyme
Location: 20831 - 22273 (-)
Gene ID: HRGMv2_0889_29_26
Type: TF
Location: 22615 - 23652 (+)
Gene ID: HRGMv2_0889_29_27
Type: CAZyme
Location: 23920 - 25359 (-)
Gene ID: HRGMv2_0889_29_28
Type: TC
Location: 25426 - 27204 (-)
Gene ID: HRGMv2_0889_29_29
Type: TF
Location: 27528 - 28562 (+)
Gene ID: HRGMv2_0889_29_30
Type: TC
Location: 28777 - 29115 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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