Cluster: HRGMv2_0889_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0889
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0889_28 | HRGMv2_0889_28_173 | 205257 | 207584 | - | 9.A.8.1.6 |
| TC | HRGMv2_0889_28 | HRGMv2_0889_28_174 | 207708 | 207929 | - | 9.A.8.1.6 |
| STP | HRGMv2_0889_28 | HRGMv2_0889_28_175 | 207969 | 208211 | - | FeoA |
| STP | HRGMv2_0889_28 | HRGMv2_0889_28_176 | 208401 | 208649 | - | PTS-HPr |
| TC | HRGMv2_0889_28 | HRGMv2_0889_28_177 | 209071 | 210534 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | HRGMv2_0889_28 | HRGMv2_0889_28_178 | 210688 | 211143 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0889_28 | HRGMv2_0889_28_179 | 211147 | 214155 | - | GH2 |
Gene ID: HRGMv2_0889_28_173
Type: TC
Location: 205257 - 207584 (-)
Type: TC
Location: 205257 - 207584 (-)
Gene ID: HRGMv2_0889_28_174
Type: TC
Location: 207708 - 207929 (-)
Type: TC
Location: 207708 - 207929 (-)
Gene ID: HRGMv2_0889_28_175
Type: STP
Location: 207969 - 208211 (-)
Type: STP
Location: 207969 - 208211 (-)
Gene ID: HRGMv2_0889_28_176
Type: STP
Location: 208401 - 208649 (-)
Type: STP
Location: 208401 - 208649 (-)
Gene ID: HRGMv2_0889_28_177
Type: TC
Location: 209071 - 210534 (-)
Type: TC
Location: 209071 - 210534 (-)
Gene ID: HRGMv2_0889_28_178
Type:
Location: 210688 - 211143 (-)
Type:
Location: 210688 - 211143 (-)
Gene ID: HRGMv2_0889_28_179
Type: CAZyme
Location: 211147 - 214155 (-)
Type: CAZyme
Location: 211147 - 214155 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.