Cluster: HRGMv2_0889_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0889
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0889_23 | HRGMv2_0889_23_9 | 8418 | 9542 | - | GH172 |
| pfam | HRGMv2_0889_23 | HRGMv2_0889_23_10 | 9555 | 9953 | - | EIIA-man |
| TC | HRGMv2_0889_23 | HRGMv2_0889_23_11 | 9980 | 10813 | - | 4.A.6.1.13 |
| TC | HRGMv2_0889_23 | HRGMv2_0889_23_12 | 10816 | 11601 | - | 4.A.6.1.13 |
| TC | HRGMv2_0889_23 | HRGMv2_0889_23_13 | 11611 | 12084 | - | 4.A.6.1.18 |
Gene ID: HRGMv2_0889_23_9
Type: CAZyme
Location: 8418 - 9542 (-)
Type: CAZyme
Location: 8418 - 9542 (-)
Gene ID: HRGMv2_0889_23_10
Type: pfam
Location: 9555 - 9953 (-)
Type: pfam
Location: 9555 - 9953 (-)
Gene ID: HRGMv2_0889_23_11
Type: TC
Location: 9980 - 10813 (-)
Type: TC
Location: 9980 - 10813 (-)
Gene ID: HRGMv2_0889_23_12
Type: TC
Location: 10816 - 11601 (-)
Type: TC
Location: 10816 - 11601 (-)
Gene ID: HRGMv2_0889_23_13
Type: TC
Location: 11611 - 12084 (-)
Type: TC
Location: 11611 - 12084 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.