Cluster: HRGMv2_0889_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0889
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0889_17 | HRGMv2_0889_17_80 | 87767 | 88519 | - | 3.A.1.3.20 |
| TC | HRGMv2_0889_17 | HRGMv2_0889_17_81 | 88532 | 89893 | - | 3.A.1.3.16 |
| TC | HRGMv2_0889_17 | HRGMv2_0889_17_82 | 90012 | 90872 | - | 3.A.1.3.15 |
| pfam | HRGMv2_0889_17 | HRGMv2_0889_17_83 | 91020 | 91886 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_0889_17 | HRGMv2_0889_17_84 | 92040 | 93059 | - | GH109 |
Gene ID: HRGMv2_0889_17_80
Type: TC
Location: 87767 - 88519 (-)
Type: TC
Location: 87767 - 88519 (-)
Gene ID: HRGMv2_0889_17_81
Type: TC
Location: 88532 - 89893 (-)
Type: TC
Location: 88532 - 89893 (-)
Gene ID: HRGMv2_0889_17_82
Type: TC
Location: 90012 - 90872 (-)
Type: TC
Location: 90012 - 90872 (-)
Gene ID: HRGMv2_0889_17_83
Type: pfam
Location: 91020 - 91886 (-)
Type: pfam
Location: 91020 - 91886 (-)
Gene ID: HRGMv2_0889_17_84
Type: CAZyme
Location: 92040 - 93059 (-)
Type: CAZyme
Location: 92040 - 93059 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_G
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.