Cluster: HRGMv2_0887_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0887
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0887_1 | HRGMv2_0887_1_101 | 122574 | 123812 | - | GH105 |
| pfam | HRGMv2_0887_1 | HRGMv2_0887_1_102 | 123920 | 124588 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0887_1 | HRGMv2_0887_1_103 | 124658 | 126823 | - | CE19 | CE8 |
| peptidase | HRGMv2_0887_1 | HRGMv2_0887_1_104 | 126820 | 127629 | - | S09.UPW |
| CAZyme | HRGMv2_0887_1 | HRGMv2_0887_1_105 | 127734 | 129329 | - | GH28 |
| TC | HRGMv2_0887_1 | HRGMv2_0887_1_106 | 129444 | 131003 | - | 2.A.2.5.1 |
Gene ID: HRGMv2_0887_1_101
Type: CAZyme
Location: 122574 - 123812 (-)
Type: CAZyme
Location: 122574 - 123812 (-)
Gene ID: HRGMv2_0887_1_102
Type: pfam
Location: 123920 - 124588 (-)
Type: pfam
Location: 123920 - 124588 (-)
Gene ID: HRGMv2_0887_1_103
Type: CAZyme
Location: 124658 - 126823 (-)
Type: CAZyme
Location: 124658 - 126823 (-)
Gene ID: HRGMv2_0887_1_104
Type: peptidase
Location: 126820 - 127629 (-)
Type: peptidase
Location: 126820 - 127629 (-)
Gene ID: HRGMv2_0887_1_105
Type: CAZyme
Location: 127734 - 129329 (-)
Type: CAZyme
Location: 127734 - 129329 (-)
Gene ID: HRGMv2_0887_1_106
Type: TC
Location: 129444 - 131003 (-)
Type: TC
Location: 129444 - 131003 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902496335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.