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Cluster: HRGMv2_0887_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0887_17 HRGMv2_0887_17_31 27870 29564 + 4.A.3.1.1
STP HRGMv2_0887_17 HRGMv2_0887_17_32 29727 30050 + DeoRC
pfam HRGMv2_0887_17 HRGMv2_0887_17_33 30104 31336 - Fic
CAZyme HRGMv2_0887_17 HRGMv2_0887_17_34 31705 33126 - GH1
TC HRGMv2_0887_17 HRGMv2_0887_17_35 33202 34980 - 4.A.3.1.1
TF HRGMv2_0887_17 HRGMv2_0887_17_36 35256 36266 + LacI
TC HRGMv2_0887_17 HRGMv2_0887_17_37 36679 38439 - 4.A.3.1.1
CAZyme HRGMv2_0887_17 HRGMv2_0887_17_38 38616 40058 - GH1
TF HRGMv2_0887_17 HRGMv2_0887_17_39 40400 41437 + LacI
CAZyme HRGMv2_0887_17 HRGMv2_0887_17_40 41705 43144 - GH1
TC HRGMv2_0887_17 HRGMv2_0887_17_41 43211 44986 - 4.A.3.1.1
TF HRGMv2_0887_17 HRGMv2_0887_17_42 45344 46348 + LacI
TC HRGMv2_0887_17 HRGMv2_0887_17_43 46563 46901 + 4.A.3.1.2
Gene ID: HRGMv2_0887_17_31
Type: TC
Location: 27870 - 29564 (+)
Gene ID: HRGMv2_0887_17_32
Type: STP
Location: 29727 - 30050 (+)
Gene ID: HRGMv2_0887_17_33
Type: pfam
Location: 30104 - 31336 (-)
Gene ID: HRGMv2_0887_17_34
Type: CAZyme
Location: 31705 - 33126 (-)
Gene ID: HRGMv2_0887_17_35
Type: TC
Location: 33202 - 34980 (-)
Gene ID: HRGMv2_0887_17_36
Type: TF
Location: 35256 - 36266 (+)
Gene ID: HRGMv2_0887_17_37
Type: TC
Location: 36679 - 38439 (-)
Gene ID: HRGMv2_0887_17_38
Type: CAZyme
Location: 38616 - 40058 (-)
Gene ID: HRGMv2_0887_17_39
Type: TF
Location: 40400 - 41437 (+)
Gene ID: HRGMv2_0887_17_40
Type: CAZyme
Location: 41705 - 43144 (-)
Gene ID: HRGMv2_0887_17_41
Type: TC
Location: 43211 - 44986 (-)
Gene ID: HRGMv2_0887_17_42
Type: TF
Location: 45344 - 46348 (+)
Gene ID: HRGMv2_0887_17_43
Type: TC
Location: 46563 - 46901 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0887_17_39 vegetarian > omnivore 1.04874 0.02677

🧭 Explore Read Mapping of CGC

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